Agent Jones was an Agent who was a cohort of Agents Brown and Smith.
Jones assisted in the interrogation of Morpheus with his fellow Agents. When Neo and Trinity attempted to rescue Morpheus from the government building where Morpheus was held, Jones materialized in the body of a chopper pilot who was desperately calling for backup. Jones used his extreme speed to dodge Neo's bullets, but failed to kill Neo, who was similarly able to avoid fatal wounds. Trinity shot Jones through the head at close range, saving Neo but merely sending Jones into the body of the nearest marine.
Jones, survived mostly throughout most of the movie the last time he was seen was when him and Agent Brown watched the fight between Neo and Agent Smith after that he was either deleted or was upgraded himself to become Thompson, Jackson, or Johnson.
His statement towards Neo when he is prepared to kill Neo, "Only Human.", implies that he has a degree of dislike towards Humanity, although not to the extent of Agent Smith
Behind the scenes
He was played by Robert Taylor.